Publications
Preprint · arXiv · August 17, 2016
The BioDynaMo Project: Creating a Platform for Large-Scale Reproducible Biological Simulations
Lukas Breitwieser, Roman Bauer, Alberto Di Meglio, Leonard Johard, Marcus Kaiser, Marco Manca
Abstract
Computer simulations have become a very powerful tool for scientific research. In order to facilitate research in computational biology, the BioDynaMo project aims at a general platform for biological computer simulations, which should be executable on hybrid cloud computing systems. This paper describes challenges and lessons learnt during the early stages of the software development process, in the context of implementation issues and the international nature of the collaboration.
Scientific Computing and Data ManagementDistributed and Parallel Computing SystemsCloud Computing and Resource Managementcomputational biologyreproducibilityhybrid cloud
More by Manuel Mazzara
- Anchored Rank-Adversarial Fine-Tuning Pretrained Visual Place Recognition ModelsarXiv · 2026
- See the Future, Classify the Present: Stochastic Latent World Modeling for Hyperspectral ImagesarXiv · 2026
- Autoresearch with Coding Agents: Generalizers and Metric-Maximizers on Quran Recitation DataLecture notes in computer science · 2026 · Citations: 1
- What Counts as a Mistake? Annotating Recitation Events in Quran Memorization TranscriptsarXiv · 2026