Dataset · Figshare · January 1, 2026
Hyperspectral Biofilm Dataset for Opportunistic Pathogen Identification
Mikhail Bogachev, Pavel Baranov, Aleksandr Sinitca, Anna V. Mironova, Dmitry R. Sharivzyanov, Alexander A. Basmanov
Abstract
The dataset comprises hyperspectral images of biofilm models created with various Gram-positive, Gram-negative bacteria, and microscopic fungi. Models range in complexity from mono-species cultures to randomly formed mixed biofilms, incorporating both ATCC strains and clinical isolates. The dataset supports research into non-contact identification of opportunistic pathogens within biofilm communities.The detailed description of the dataset and research are provided in the following paper:Bogachev, M. I., Baranov, P. S., Sinitca, A. M., Mironova, A. V., Sharivzyanov, D. R., Basmanov, A. A., Trizna, E. J., Gorshkova, A. S., Pyko, N. S., & Kayumov, A. R. (2026). Non-contact identification of opportunistic pathogens in mixed biofilm contaminations by hyperspectral imaging. Analytica Chimica Acta, 345098. https://doi.org/10.1016/j.aca.2026.345098
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